Skip to main content

Publications

featured publications

  • pyPESTO: A modular and scalable tool for parameter estimation for dynamic models.

    Bioinformatics (Oxford, England)

    Authors: Yannik Schälte, Fabian Fröhlich, Paul J Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina Lakrisenko, Dantong Wang, Elba Raimúndez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer

  • FitMultiCell: Simulating and parameterizing computational models of multi-scale and multi-cellular processes.

    Bioinformatics (Oxford, England)

    Authors: Emad Alamoudi, Yannik Schälte, Robert Müller, Jörn Starruß, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer

  • Modeling early treatment response in AML from cell-free tumor DNA.

    iScience

    Authors: Dantong Wang, Christian Rausch, Simon A Buerger, Sebastian Tschuri, Maja Rothenberg-Thurley, Melanie Schulz, Jan Hasenauer, Frank Ziemann, Klaus H Metzeler, Carsten Marr

  • Retest variability and patient reliability indices of quantitative fundus autofluorescence in age-related macular degeneration: a MACUSTAR study report.

    Scientific reports

    Authors: Leon von der Emde, Merten Mallwitz, Marc Vaisband, Jan Hasenauer, Marlene Saßmannshausen, Jan Henrik Terheyden, Kenneth R Sloan, Steffen Schmitz-Valckenberg, Robert P Finger, Frank G Holz, Thomas Ach

  • Posterior marginalization accelerates Bayesian inference for dynamical models of biological processes.

    iScience

    Authors: Elba Raimúndez, Michael Fedders, Jan Hasenauer

  • Accessibility of covariance information creates vulnerability in Federated Learning frameworks.

    Bioinformatics (Oxford, England)

    Authors: Manuel Huth, Jonas Arruda, Roy Gusinow, Lorenzo Contento, Evelina Tacconelli, Jan Hasenauer

  • How European Research Projects Can Support Vaccination Strategies: The Case of the ORCHESTRA Project for SARS-CoV-2.

    Vaccines

    Authors: Anna Maria Azzini, Lorenzo Maria Canziani, Ruth Joanna Davis, Massimo Mirandola, Michael Hoelscher, Laurence Meyer, Cédric Laouénan, Maddalena Giannella, Jesús Rodríguez-Baño, Paolo Boffetta, Dana Mates, Surbhi Malhotra-Kumar, Gabriella Scipione, Caroline Stellmach, Eugenia Rinaldi, Jan Hasenauer, Evelina Tacconelli

  • Cox proportional hazards deep neural network identifies peripheral blood complete remission to be at least equivalent to morphologic complete remission in predicting outcomes of patients treated with azacitidine-A prospective cohort study by the AGMT.

    American journal of hematology

    Authors: Lisa Pleyer, Marc Vaisband, Manuel Drost, Michael Pfeilstöcker, Reinhard Stauder, Sonja Heibl, Heinz Sill, Michael Girschikofsky, Margarete Stampfl-Mattersberger, Angelika Pichler, Bernd Hartmann, Andreas Petzer, Martin Schreder, Clemens A Schmitt, Sonia Vallet, Thomas Melchardt, Armin Zebisch, Petra Pichler, Nadja Zaborsky, Sigrid Machherndl-Spandl, Dominik Wolf, Felix Keil, Jan Hasenauer, Julian Larcher-Senn, Richard Greil

  • Clinical phenotypes and quality of life to define post-COVID-19 syndrome: a cluster analysis of the multinational, prospective ORCHESTRA cohort.

    EClinicalMedicine

    Authors: Elisa Gentilotti, Anna Górska, Adriana Tami, Roy Gusinow, Massimo Mirandola, Jesús Rodríguez Baño, Zaira R Palacios Baena, Elisa Rossi, Jan Hasenauer, Iris Lopes-Rafegas, Elda Righi, Natascia Caroccia, Salvatore Cataudella, Zeno Pasquini, Thomas Osmo, Lidia Del Piccolo, Alessia Savoldi, Samir Kumar-Singh, Fulvia Mazzaferri, Maria Giulia Caponcello, Gerolf de Boer, Gabriel Levy Hara, Pasquale De Nardo, Surbhi Malhotra, Lorenzo Maria Canziani, Jade Ghosn, Aline-Marie Florence, Nadhem Lafhej, Bernardina T F van der Gun, Maddalena Giannella, Cédric Laouénan, Evelina Tacconelli

  • Top publication

    Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease.

    Cell reports

    Authors: Theodore S Kapellos, Kevin Baßler, Wataru Fujii, Christina Nalkurthi, Anna C Schaar, Lorenzo Bonaguro, Tal Pecht, Izabela Galvao, Shobhit Agrawal, Adem Saglam, Erica Dudkin, Amit Frishberg, Elena de Domenico, Arik Horne, Chantal Donovan, Richard Y Kim, David Gallego-Ortega, Tessa E Gillett, Meshal Ansari, Jonas Schulte-Schrepping, Nina Offermann, Ignazio Antignano, Burcu Sivri, Wenying Lu, Mathew S Eapen, Martina van Uelft, Collins Osei-Sarpong, Maarten van den Berge, Hylke C Donker, Harry J M Groen, Sukhwinder S Sohal, Johanna Klein, Tina Schreiber, Andreas Feißt, Ali Önder Yildirim, Herbert B Schiller, Martijn C Nawijn, Matthias Becker, Kristian Händler, Marc Beyer, Melania Capasso, Thomas Ulas, Jan Hasenauer, Carmen Pizarro, Fabian J Theis, Philip M Hansbro, Dirk Skowasch, Joachim L Schultze