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Publications

featured publications

  • Using machine learning to predict antibody response to SARS-CoV-2 vaccination in solid organ transplant recipients: the multicentre ORCHESTRA cohort.

    Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

    Authors: Maddalena Giannella, Manuel Huth, Elda Righi, Jan Hasenauer, Lorenzo Marconi, Angelina Konnova, Akshita Gupta, An Hotterbeekx, Matilda Berkell, Zaira R Palacios-Baena, Maria Cristina Morelli, Mariarosa Tamè, Marco Busutti, Luciano Potena, Elena Salvaterra, Giuseppe Feltrin, Gino Gerosa, Lucrezia Furian, Patrizia Burra, Salvatore Piano, Umberto Cillo, Mara Cananzi, Monica Loy, Gianluigi Zaza, Francesco Onorati, Amedeo Carraro, Fiorella Gastaldon, Maurizio Nordio, Samir Kumar-Singh, Jesús Rodríguez Baño, Tiziana Lazzarotto, Pierluigi Viale, Evelina Tacconelli

  • Validation of genetic variants from NGS data using deep convolutional neural networks.

    BMC bioinformatics

    Authors: Marc Vaisband, Maria Schubert, Franz Josef Gassner, Roland Geisberger, Richard Greil, Nadja Zaborsky, Jan Hasenauer

  • IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line.

    Bioinformatics (Oxford, England)

    Authors: Altay Yuzeir, David Alejandro Bejarano, Stephan Grein, Jan Hasenauer, Andreas Schlitzer, Jiangyan Yu

  • Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts.

    Epidemics

    Authors: Lorenzo Contento, Noemi Castelletti, Elba Raimúndez, Ronan Le Gleut, Yannik Schälte, Paul Stapor, Ludwig Christian Hinske, Michael Hoelscher, Andreas Wieser, Katja Radon, Christiane Fuchs, Jan Hasenauer

  • Health-Related Quality of Life as Assessed by the EQ-5D-5L Predicts Outcomes of Patients Treated with Azacitidine-A Prospective Cohort Study by the AGMT.

    Cancers

    Authors: Lisa Pleyer, Sonja Heibl, Christoph Tinchon, Sonia Vallet, Martin Schreder, Thomas Melchardt, Norbert Stute, Kim Tamara Föhrenbach Quiroz, Michael Leisch, Alexander Egle, Lukas Scagnetti, Dominik Wolf, Richard Beswick, Manuel Drost, Julian Larcher-Senn, Thomas Grochtdreis, Marc Vaisband, Jan Hasenauer, Nadja Zaborsky, Richard Greil, Reinhard Stauder

  • Hyper-Reflective Foci in Intermediate Age-Related Macular Degeneration: Spatial Abundance and Impact on Retinal Morphology.

    Investigative ophthalmology & visual science

    Authors: Marlene Saßmannshausen, Marc Vaisband, Leon von der Emde, Kenneth R Sloan, Jan Hasenauer, Frank G Holz, Thomas Ach

  • Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks.

    PLoS computational biology

    Authors: Polina Lakrisenko, Paul Stapor, Stephan Grein, Łukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer

  • Clinical Impact of Monoclonal Antibodies in the Treatment of High-Risk Patients with SARS-CoV-2 Breakthrough Infections: The ORCHESTRA Prospective Cohort Study.

    Biomedicines

    Authors: Alessia Savoldi, Matteo Morra, Alessandro Castelli, Massimo Mirandola, Matilda Berkell, Mathias Smet, Angelina Konnova, Elisa Rossi, Salvatore Cataudella, Pasquale De Nardo, Elisa Gentilotti, Akshita Gupta, Daniele Fasan, Enrico Gibbin, Filippo Cioli Puviani, Jan Hasenauer, Roy Gusinow, Adriana Tami, Samir Kumar-Singh, Surbhi Malhotra-Kumar, mAb Orchestra Working Group, Evelina Tacconelli

  • Challenges of data sharing in European Covid-19 projects: A learning opportunity for advancing pandemic preparedness and response.

    The Lancet regional health. Europe

    Authors: Evelina Tacconelli, Anna Gorska, Elena Carrara, Ruth Joanna Davis, Marc Bonten, Alex W Friedrich, Corinna Glasner, Herman Goossens, Jan Hasenauer, Josep Maria Haro Abad, José L Peñalvo, Albert Sanchez-Niubo, Anastassja Sialm, Gabriella Scipione, Gloria Soriano, Yazdan Yazdanpanah, Ellen Vorstenbosch, Thomas Jaenisch

  • Histologic Cell Shape Descriptors for the Retinal Pigment Epithelium in Age-Related Macular Degeneration: A Comparison to Unaffected Eyes.

    Translational vision science & technology

    Authors: Leon von der Emde, Marc Vaisband, Jan Hasenauer, Leonie Bourauel, Katharina Bermond, Marlene Saßmannshausen, Rainer Heintzmann, Frank G Holz, Christine A Curcio, Kenneth R Sloan, Thomas Ach