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Publications

featured publications

  • HER2 Expression, Test Deviations, and Their Impact on Survival in Metastatic Gastric Cancer: Results From the Prospective Multicenter VARIANZ Study.

    Journal of clinical oncology : official journal of the American Society of Clinical Oncology

    Authors: Ivonne Haffner, Katrin Schierle, Elba Raimúndez, Birgitta Geier, Dieter Maier, Jan Hasenauer, Birgit Luber, Axel Walch, Katharina Kolbe, Jorge Riera Knorrenschild, Albrecht Kretzschmar, Beate Rau, Ludwig Fischer von Weikersthal, Miriam Ahlborn, Gabriele Siegler, Stefan Fuxius, Thomas Decker, Christian Wittekind, Florian Lordick

  • Benchmarking of numerical integration methods for ODE models of biological systems.

    Scientific reports

    Authors: Philipp Städter, Yannik Schälte, Leonard Schmiester, Jan Hasenauer, Paul L Stapor

  • COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling.

    Epidemics

    Authors: Elba Raimúndez, Erika Dudkin, Jakob Vanhoefer, Emad Alamoudi, Simon Merkt, Lara Fuhrmann, Fan Bai, Jan Hasenauer

  • PEtab-Interoperable specification of parameter estimation problems in systems biology.

    PLoS computational biology

    Authors: Leonard Schmiester, Yannik Schälte, Frank T Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul L Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R Banga, Jens Timmer, Alejandro F Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl

  • Closing the gap between formats for storing layout information in systems biology.

    Briefings in bioinformatics

    Authors: David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider

  • AsthmaMap: An interactive knowledge repository for mechanisms of asthma.

    The Journal of allergy and clinical immunology

    Authors: Alexander Mazein, Olga Ivanova, Irina Balaur, Marek Ostaszewski, Valeriya Berzhitskaya, Tatiana Serebriyskaya, Thomas Ligon, Jan Hasenauer, Bertrand De Meulder, Rupert W Overall, Ludovic Roy, Richard G Knowles, Craig E Wheelock, Sven-Erik Dahlen, Kian Fan Chung, Ian M Adcock, Graham Roberts, Ratko Djukanovic, Johann Pellet, Piotr Gawron, Rudi Balling, Anke H Maitland-van der Zee, Reinhard Schneider, Peter J Sterk, Charles Auffray

  • Correction to: Determining the effects of trastuzumab, cetuximab and afatinib by phosphoprotein, gene expression and phenotypic analysis in gastric cancer cell lines.

    BMC cancer

    Authors: Karolin Ebert, Gwen Zwingenberger, Elena Barbaria, Simone Keller, Corinna Heck, Rouven Arnold, Vanessa Hollerieth, Julian Mattes, Robert Geffers, Elba Raimúndez, Jan Hasenauer, Birgit Luber

  • Determining the effects of trastuzumab, cetuximab and afatinib by phosphoprotein, gene expression and phenotypic analysis in gastric cancer cell lines.

    BMC cancer

    Authors: Karolin Ebert, Gwen Zwingenberger, Elena Barbaria, Simone Keller, Corinna Heck, Rouven Arnold, Vanessa Hollerieth, Julian Mattes, Robert Geffers, Elba Raimúndez, Jan Hasenauer, Birgit Luber

  • Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach.

    Journal of mathematical biology

    Authors: Leonard Schmiester, Daniel Weindl, Jan Hasenauer

  • Closing the gap between formats for storing layout information in systems biology.

    Briefings in bioinformatics

    Authors: David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider